satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
Visualize and annotate genomic coverage with ggplot2
This is an R package for element cycle analysis using metagenomic data.
A collection of datasets of ML problem solving
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Fast tidy functions for date manipulation.
Easy interactive web applications with R
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Inferring CNV from Single-Cell RNA-Seq
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
R toolkit for the analysis of single-cell chromatin data
A repository of R usage tips for data cleaning, data mining, data visualisation, statistical inference and machine learning
Accurate sample inference from amplicon data with single nucleotide resolution
R interface for Apache Spark
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Simple Features for R
Make Complex Heatmaps
ADaM in R Asset Library
renv: Project environments for R.
Tidy Messy Data
R package for detecting doublets in single-cell RNA sequencing data
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan